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matlab-based open-source toolbox tfmlab  (MathWorks Inc)


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    MathWorks Inc matlab-based open-source toolbox tfmlab
    a Phase contrast pictures of gap closure at 16 h (upper) Scale bar: 100 µm: Quantification of gap closure for BMPR2 wt or BMPR2 +/– ECs at 8 h or 16 h after silicone insert removal. (lower) *** p < 0.001. b Images of wound healing assay with BMPR2 wt ECs (green) and BMPR2 +/– ECs (magenta) at 0 h or 16 h after silicone insert removal. BMPR2 wt (bottom) ECs and BMPR2 +/– (top) ECs were seeded separately in one compartment of the seeding insert. Scale bar: 100 µm. (middle) Particle image velocimetry analysis of trajectories from ECs used in gap closure assay on the (left). Vectors indicate the main direction and the magnitude of ECs displacements over time. Insets show regions of interest (I & II). (right) Quantification of EC <t>displacement</t> magnitude (D y ) measured by trajectory analysis for BMPR2 wt ECs and BMPR2 +/– ECs and expressed in pixel² per frame. *** p < 0.001. c Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs junctions. Beta-Catenin (black), DAPI (blue). Insets show regions of interest. Scale bar: 20 µm. d Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs: Phalloidin (magenta), DAPI (blue), phospho-Myosin Light Chain 2 (pMLC2) (green). Insets show regions of interest. Scale bar: 20 µm. Fluorescence intensity profiles of BMPR2 wt ECs and BMPR2 +/– ECs were measured along the direction of the arrows depicted (cell periphery towards inside of the cell) and averaged for 5 cells. Confidence bands represent standard deviation of the mean. Graphic representation of observed phalloidin and pMLC2 localization at the leading edge for BMPR2 wt ECs and BMPR2 +/– ECs. The corresponding locations of EC Filopodia and Lamellum at the polarized cells leading edge are indicated (arrows); F-actin (magenta), contractile actomyosin (green). e (left) Absolute hydrogel displacement fields for BMPR2 wt or BMPR2 +/– sprouts. The displacement field magnitude is indicated by color coding (left). (right) Displacement line scans along individual sprouts showing displacements in µm from sprout origin to tip. Negative values correspond to ECM displacements towards the sprout origin. f (upper) Average displacements measured along sprouts of similar length (3 cells) for BMPR2 wt ECs and BMPR2 +/– ECs. The length of each sprout was normalized from 0 (base of the sprout) to 1 (tip of the sprout) to make them comparable. (below) Maximum displacements measured for individual sprouts for BMPR2 wt ECs and BMPR2 +/– ECs.
    Matlab Based Open Source Toolbox Tfmlab, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/matlab-based open-source toolbox tfmlab/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    matlab-based open-source toolbox tfmlab - by Bioz Stars, 2026-03
    90/100 stars

    Images

    1) Product Images from "Endothelial tip-cell position, filopodia formation and biomechanics require BMPR2 expression and signaling"

    Article Title: Endothelial tip-cell position, filopodia formation and biomechanics require BMPR2 expression and signaling

    Journal: Communications Biology

    doi: 10.1038/s42003-024-07431-8

    a Phase contrast pictures of gap closure at 16 h (upper) Scale bar: 100 µm: Quantification of gap closure for BMPR2 wt or BMPR2 +/– ECs at 8 h or 16 h after silicone insert removal. (lower) *** p < 0.001. b Images of wound healing assay with BMPR2 wt ECs (green) and BMPR2 +/– ECs (magenta) at 0 h or 16 h after silicone insert removal. BMPR2 wt (bottom) ECs and BMPR2 +/– (top) ECs were seeded separately in one compartment of the seeding insert. Scale bar: 100 µm. (middle) Particle image velocimetry analysis of trajectories from ECs used in gap closure assay on the (left). Vectors indicate the main direction and the magnitude of ECs displacements over time. Insets show regions of interest (I & II). (right) Quantification of EC displacement magnitude (D y ) measured by trajectory analysis for BMPR2 wt ECs and BMPR2 +/– ECs and expressed in pixel² per frame. *** p < 0.001. c Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs junctions. Beta-Catenin (black), DAPI (blue). Insets show regions of interest. Scale bar: 20 µm. d Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs: Phalloidin (magenta), DAPI (blue), phospho-Myosin Light Chain 2 (pMLC2) (green). Insets show regions of interest. Scale bar: 20 µm. Fluorescence intensity profiles of BMPR2 wt ECs and BMPR2 +/– ECs were measured along the direction of the arrows depicted (cell periphery towards inside of the cell) and averaged for 5 cells. Confidence bands represent standard deviation of the mean. Graphic representation of observed phalloidin and pMLC2 localization at the leading edge for BMPR2 wt ECs and BMPR2 +/– ECs. The corresponding locations of EC Filopodia and Lamellum at the polarized cells leading edge are indicated (arrows); F-actin (magenta), contractile actomyosin (green). e (left) Absolute hydrogel displacement fields for BMPR2 wt or BMPR2 +/– sprouts. The displacement field magnitude is indicated by color coding (left). (right) Displacement line scans along individual sprouts showing displacements in µm from sprout origin to tip. Negative values correspond to ECM displacements towards the sprout origin. f (upper) Average displacements measured along sprouts of similar length (3 cells) for BMPR2 wt ECs and BMPR2 +/– ECs. The length of each sprout was normalized from 0 (base of the sprout) to 1 (tip of the sprout) to make them comparable. (below) Maximum displacements measured for individual sprouts for BMPR2 wt ECs and BMPR2 +/– ECs.
    Figure Legend Snippet: a Phase contrast pictures of gap closure at 16 h (upper) Scale bar: 100 µm: Quantification of gap closure for BMPR2 wt or BMPR2 +/– ECs at 8 h or 16 h after silicone insert removal. (lower) *** p < 0.001. b Images of wound healing assay with BMPR2 wt ECs (green) and BMPR2 +/– ECs (magenta) at 0 h or 16 h after silicone insert removal. BMPR2 wt (bottom) ECs and BMPR2 +/– (top) ECs were seeded separately in one compartment of the seeding insert. Scale bar: 100 µm. (middle) Particle image velocimetry analysis of trajectories from ECs used in gap closure assay on the (left). Vectors indicate the main direction and the magnitude of ECs displacements over time. Insets show regions of interest (I & II). (right) Quantification of EC displacement magnitude (D y ) measured by trajectory analysis for BMPR2 wt ECs and BMPR2 +/– ECs and expressed in pixel² per frame. *** p < 0.001. c Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs junctions. Beta-Catenin (black), DAPI (blue). Insets show regions of interest. Scale bar: 20 µm. d Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs: Phalloidin (magenta), DAPI (blue), phospho-Myosin Light Chain 2 (pMLC2) (green). Insets show regions of interest. Scale bar: 20 µm. Fluorescence intensity profiles of BMPR2 wt ECs and BMPR2 +/– ECs were measured along the direction of the arrows depicted (cell periphery towards inside of the cell) and averaged for 5 cells. Confidence bands represent standard deviation of the mean. Graphic representation of observed phalloidin and pMLC2 localization at the leading edge for BMPR2 wt ECs and BMPR2 +/– ECs. The corresponding locations of EC Filopodia and Lamellum at the polarized cells leading edge are indicated (arrows); F-actin (magenta), contractile actomyosin (green). e (left) Absolute hydrogel displacement fields for BMPR2 wt or BMPR2 +/– sprouts. The displacement field magnitude is indicated by color coding (left). (right) Displacement line scans along individual sprouts showing displacements in µm from sprout origin to tip. Negative values correspond to ECM displacements towards the sprout origin. f (upper) Average displacements measured along sprouts of similar length (3 cells) for BMPR2 wt ECs and BMPR2 +/– ECs. The length of each sprout was normalized from 0 (base of the sprout) to 1 (tip of the sprout) to make them comparable. (below) Maximum displacements measured for individual sprouts for BMPR2 wt ECs and BMPR2 +/– ECs.

    Techniques Used: Wound Healing Assay, Immunofluorescence, Staining, Fluorescence, Standard Deviation



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    matlab-based open-source toolbox tfmlab  (MathWorks Inc)
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    MathWorks Inc matlab-based open-source toolbox tfmlab
    a Phase contrast pictures of gap closure at 16 h (upper) Scale bar: 100 µm: Quantification of gap closure for BMPR2 wt or BMPR2 +/– ECs at 8 h or 16 h after silicone insert removal. (lower) *** p < 0.001. b Images of wound healing assay with BMPR2 wt ECs (green) and BMPR2 +/– ECs (magenta) at 0 h or 16 h after silicone insert removal. BMPR2 wt (bottom) ECs and BMPR2 +/– (top) ECs were seeded separately in one compartment of the seeding insert. Scale bar: 100 µm. (middle) Particle image velocimetry analysis of trajectories from ECs used in gap closure assay on the (left). Vectors indicate the main direction and the magnitude of ECs displacements over time. Insets show regions of interest (I & II). (right) Quantification of EC <t>displacement</t> magnitude (D y ) measured by trajectory analysis for BMPR2 wt ECs and BMPR2 +/– ECs and expressed in pixel² per frame. *** p < 0.001. c Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs junctions. Beta-Catenin (black), DAPI (blue). Insets show regions of interest. Scale bar: 20 µm. d Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs: Phalloidin (magenta), DAPI (blue), phospho-Myosin Light Chain 2 (pMLC2) (green). Insets show regions of interest. Scale bar: 20 µm. Fluorescence intensity profiles of BMPR2 wt ECs and BMPR2 +/– ECs were measured along the direction of the arrows depicted (cell periphery towards inside of the cell) and averaged for 5 cells. Confidence bands represent standard deviation of the mean. Graphic representation of observed phalloidin and pMLC2 localization at the leading edge for BMPR2 wt ECs and BMPR2 +/– ECs. The corresponding locations of EC Filopodia and Lamellum at the polarized cells leading edge are indicated (arrows); F-actin (magenta), contractile actomyosin (green). e (left) Absolute hydrogel displacement fields for BMPR2 wt or BMPR2 +/– sprouts. The displacement field magnitude is indicated by color coding (left). (right) Displacement line scans along individual sprouts showing displacements in µm from sprout origin to tip. Negative values correspond to ECM displacements towards the sprout origin. f (upper) Average displacements measured along sprouts of similar length (3 cells) for BMPR2 wt ECs and BMPR2 +/– ECs. The length of each sprout was normalized from 0 (base of the sprout) to 1 (tip of the sprout) to make them comparable. (below) Maximum displacements measured for individual sprouts for BMPR2 wt ECs and BMPR2 +/– ECs.
    Matlab Based Open Source Toolbox Tfmlab, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/matlab-based open-source toolbox tfmlab/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    matlab-based open-source toolbox tfmlab - by Bioz Stars, 2026-03
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    a Phase contrast pictures of gap closure at 16 h (upper) Scale bar: 100 µm: Quantification of gap closure for BMPR2 wt or BMPR2 +/– ECs at 8 h or 16 h after silicone insert removal. (lower) *** p < 0.001. b Images of wound healing assay with BMPR2 wt ECs (green) and BMPR2 +/– ECs (magenta) at 0 h or 16 h after silicone insert removal. BMPR2 wt (bottom) ECs and BMPR2 +/– (top) ECs were seeded separately in one compartment of the seeding insert. Scale bar: 100 µm. (middle) Particle image velocimetry analysis of trajectories from ECs used in gap closure assay on the (left). Vectors indicate the main direction and the magnitude of ECs displacements over time. Insets show regions of interest (I & II). (right) Quantification of EC displacement magnitude (D y ) measured by trajectory analysis for BMPR2 wt ECs and BMPR2 +/– ECs and expressed in pixel² per frame. *** p < 0.001. c Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs junctions. Beta-Catenin (black), DAPI (blue). Insets show regions of interest. Scale bar: 20 µm. d Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs: Phalloidin (magenta), DAPI (blue), phospho-Myosin Light Chain 2 (pMLC2) (green). Insets show regions of interest. Scale bar: 20 µm. Fluorescence intensity profiles of BMPR2 wt ECs and BMPR2 +/– ECs were measured along the direction of the arrows depicted (cell periphery towards inside of the cell) and averaged for 5 cells. Confidence bands represent standard deviation of the mean. Graphic representation of observed phalloidin and pMLC2 localization at the leading edge for BMPR2 wt ECs and BMPR2 +/– ECs. The corresponding locations of EC Filopodia and Lamellum at the polarized cells leading edge are indicated (arrows); F-actin (magenta), contractile actomyosin (green). e (left) Absolute hydrogel displacement fields for BMPR2 wt or BMPR2 +/– sprouts. The displacement field magnitude is indicated by color coding (left). (right) Displacement line scans along individual sprouts showing displacements in µm from sprout origin to tip. Negative values correspond to ECM displacements towards the sprout origin. f (upper) Average displacements measured along sprouts of similar length (3 cells) for BMPR2 wt ECs and BMPR2 +/– ECs. The length of each sprout was normalized from 0 (base of the sprout) to 1 (tip of the sprout) to make them comparable. (below) Maximum displacements measured for individual sprouts for BMPR2 wt ECs and BMPR2 +/– ECs.

    Journal: Communications Biology

    Article Title: Endothelial tip-cell position, filopodia formation and biomechanics require BMPR2 expression and signaling

    doi: 10.1038/s42003-024-07431-8

    Figure Lengend Snippet: a Phase contrast pictures of gap closure at 16 h (upper) Scale bar: 100 µm: Quantification of gap closure for BMPR2 wt or BMPR2 +/– ECs at 8 h or 16 h after silicone insert removal. (lower) *** p < 0.001. b Images of wound healing assay with BMPR2 wt ECs (green) and BMPR2 +/– ECs (magenta) at 0 h or 16 h after silicone insert removal. BMPR2 wt (bottom) ECs and BMPR2 +/– (top) ECs were seeded separately in one compartment of the seeding insert. Scale bar: 100 µm. (middle) Particle image velocimetry analysis of trajectories from ECs used in gap closure assay on the (left). Vectors indicate the main direction and the magnitude of ECs displacements over time. Insets show regions of interest (I & II). (right) Quantification of EC displacement magnitude (D y ) measured by trajectory analysis for BMPR2 wt ECs and BMPR2 +/– ECs and expressed in pixel² per frame. *** p < 0.001. c Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs junctions. Beta-Catenin (black), DAPI (blue). Insets show regions of interest. Scale bar: 20 µm. d Immunofluorescence staining of BMPR2 wt ECs and BMPR2 +/– ECs: Phalloidin (magenta), DAPI (blue), phospho-Myosin Light Chain 2 (pMLC2) (green). Insets show regions of interest. Scale bar: 20 µm. Fluorescence intensity profiles of BMPR2 wt ECs and BMPR2 +/– ECs were measured along the direction of the arrows depicted (cell periphery towards inside of the cell) and averaged for 5 cells. Confidence bands represent standard deviation of the mean. Graphic representation of observed phalloidin and pMLC2 localization at the leading edge for BMPR2 wt ECs and BMPR2 +/– ECs. The corresponding locations of EC Filopodia and Lamellum at the polarized cells leading edge are indicated (arrows); F-actin (magenta), contractile actomyosin (green). e (left) Absolute hydrogel displacement fields for BMPR2 wt or BMPR2 +/– sprouts. The displacement field magnitude is indicated by color coding (left). (right) Displacement line scans along individual sprouts showing displacements in µm from sprout origin to tip. Negative values correspond to ECM displacements towards the sprout origin. f (upper) Average displacements measured along sprouts of similar length (3 cells) for BMPR2 wt ECs and BMPR2 +/– ECs. The length of each sprout was normalized from 0 (base of the sprout) to 1 (tip of the sprout) to make them comparable. (below) Maximum displacements measured for individual sprouts for BMPR2 wt ECs and BMPR2 +/– ECs.

    Article Snippet: Displacement vector fields and segmentation of the cell geometries was performed using the MATLAB-based open-source toolbox TFMLAB (code available at https://gitlab.kuleuven.be/MAtrix/Jorge/tfmlab_public ).

    Techniques: Wound Healing Assay, Immunofluorescence, Staining, Fluorescence, Standard Deviation